Treedex, the TREE Data Explorer

Treedex is a versatile application for the analysis of biological data from multiple species. Thanks to its interactive environment, Treedex allows any scientist to navigate through complex observations across any number of species and experimental conditions, and easily relate the data points with the phylogenetic tree. Besides different species, Treedex is suited to study any entities with an underlying tree architecture, such as cell types (from the perspective of their developmental or somatic tree), or cancer clones (from the perspective of their cell lineages). Visit our showcase page to check some of its current features.

Treedex serves for both visualization and analysis of any comparative data, offering an intuitive interface to run methods from evolutionary and comparative biology (such as phylogenetic regression, phylogenetic profiling, protein coevolution and others), as well as standard statistics tools.

Treedex is currently under development. The prototype visible in this website was build with PyQt as a standalone app, and it has been since then discontinued. Starting from 2021, we decided to integrate Treedex into the ETE toolkit framework, so that it will be browser-based, and it could be run by any computer or as webservice. Stay tuned to learn about its upcoming release!

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